com.pixelmed.apps
Class DoseUtility

java.lang.Object
  java.awt.Component
      java.awt.Container
          java.awt.Window
              java.awt.Frame
                  javax.swing.JFrame
                      com.pixelmed.display.ApplicationFrame
                          com.pixelmed.apps.DoseUtility

All Implemented Interfaces:

ImageObserver, MenuContainer, Serializable, Accessible, RootPaneContainer, WindowConstants

public class DoseUtility
extends ApplicationFrame

This class is an application for retrieving dose information about DICOM studies of patients.

It is configured by use of a properties file that resides in the user's home directory in .com.pixelmed.display.DoseUtility.properties.

It supports retrieval of Dose SR objects and dose screen save images.

See Also:

Serialized Form

Nested Class Summary

protected class	DoseUtility.ConfigureActionListener
protected class	DoseUtility.ImportActionListener
protected class	DoseUtility.ImportWorker
protected class	DoseUtility.LogActionListener
protected class	DoseUtility.MakeSRActionListener
protected class	DoseUtility.MakeSRWorker
protected class	DoseUtility.OurMediaImporter
protected class	DoseUtility.OurMultipleInstanceTransferStatusHandler
protected class	DoseUtility.OurQueryTreeBrowser
protected class	DoseUtility.OurReceivedObjectHandler
protected class	DoseUtility.OurSourceDatabaseTreeBrowser
protected class	DoseUtility.PurgeActionListener
protected class	DoseUtility.PurgeWorker
protected class	DoseUtility.QueryActionListener
protected class	DoseUtility.QueryWorker
protected class	DoseUtility.RegistryActionListener
protected class	DoseUtility.RegistryWorker
protected class	DoseUtility.ReportActionListener
protected class	DoseUtility.ReportWorker
protected class	DoseUtility.RetrieveActionListener
protected class	DoseUtility.SendActionListener
protected class	DoseUtility.SendWorker
protected class	DoseUtility.ValidateActionListener
protected class	DoseUtility.ValidateWorker
protected class	DoseUtility.ViewActionListener
protected class	DoseUtility.ViewWorker

Nested classes/interfaces inherited from class javax.swing.JFrame

JFrame.AccessibleJFrame

Nested classes/interfaces inherited from class java.awt.Frame

Frame.AccessibleAWTFrame

Nested classes/interfaces inherited from class java.awt.Window

Window.AccessibleAWTWindow

Nested classes/interfaces inherited from class java.awt.Container

Container.AccessibleAWTContainer

Nested classes/interfaces inherited from class java.awt.Component

Component.AccessibleAWTComponent, Component.BaselineResizeBehavior, Component.BltBufferStrategy, Component.FlipBufferStrategy

Field Summary

protected JCheckBox	caseSensitiveCodeMeaningValidationCheckBox
protected static String	caseSensitiveCodeMeaningValidationLabelText
protected static String	configureButtonLabel
protected static String	configureButtonToolTipText
protected DatabaseTreeRecord[]	currentDatabaseTreeRecordSelections
protected QueryInformationModel	currentRemoteQueryInformationModel
protected QueryTreeBrowser	currentRemoteQueryTreeBrowser
protected SafeCursorChanger	cursorChanger
protected JCheckBox	deidentifyWhenSendingToRegistryCheckBox
protected static String	deidentifyWhenSendingToRegistryLabelText
protected FTPApplicationProperties	ftpApplicationProperties
protected FTPRemoteHostInformation	ftpRemoteHostInformation
protected static boolean	haveCheckedForJPEG2000Part1Codec
protected static boolean	haveCheckedForJPEGLosslessCodec
protected static boolean	haveFoundJPEG2000Part1Codec
protected static boolean	haveFoundJPEGLosslessCodec
protected static boolean	haveScannedForCodecs
protected static String	importButtonLabel
protected static String	importButtonToolTipText
protected String	importDirectoryPath
protected static String	localDatabaseName
protected static String	localDatabaseServerName
protected static String	logButtonLabel
protected static String	logButtonToolTipText
protected MessageLogger	logger
protected static int	loggerDialogHeightWanted
protected static int	loggertDialogWidthWanted
protected static String	loggerTitleMessage
protected static String	makeSRButtonLabel
protected static String	makeSRButtonToolTipText
protected NetworkApplicationInformation	networkApplicationInformation
protected NetworkApplicationProperties	networkApplicationProperties
protected String	ourCalledAETitle
protected JCheckBox	processOnlyDoseSeriesRecordCheckBox
protected static String	processOnlyDoseSeriesRecordLabelText
protected SafeProgressBarUpdaterThread	progressBarUpdater
protected static String	propertiesFileName
protected static String	propertyName_CurrentlySelectedDoseRegistry
protected static String	propertyName_DicomCurrentlySelectedQueryTargetAE
protected static String	propertyName_DicomCurrentlySelectedStorageTargetAE
protected static String	purgeButtonLabel
protected static String	purgeButtonToolTipText
protected static String	queryButtonLabel
protected static String	queryButtonToolTipText
protected JTextField	queryFilterPatientIDTextField
protected JTextField	queryFilterPatientNameTextField
protected JTextField	queryFilterStudyDateTextField
protected static String	queryIntroductionLabelText
protected static String	queryPatientIDLabelText
protected static String	queryPatientIDToolTipText
protected static String	queryPatientNameLabelText
protected static String	queryPatientNameToolTipText
protected static String	queryStudyDateLabelText
protected static String	queryStudyDateToolTipText
protected static String	registryButtonLabel
protected static String	registryButtonToolTipText
protected JPanel	remoteQueryRetrievePanel
protected static String	reportButtonLabel
protected static String	reportButtonToolTipText
protected static int	reportDialogHeightWanted
protected static int	reportDialogWidthWanted
protected JCheckBox	reportTabularLayoutCheckBox
protected static String	reportTabularLayoutLabelText
protected static String	reportTitleMessage
protected static String	retrieveButtonLabel
protected static String	retrieveButtonToolTipText
protected JCheckBox	retrieveOnlyDoseSeriesRecordCheckBox
protected static String	retrieveOnlyDoseSeriesRecordLabelText
protected File	savedImagesFolder
protected static String	sendButtonLabel
protected static String	sendButtonToolTipText
protected JCheckBox	showDetailedLogCheckBox
protected static String	showDetailedLogLabelText
protected JCheckBox	showOnlyDoseSummaryCheckBox
protected static String	showOnlyDoseSummaryLabelText
protected DatabaseInformationModel	srcDatabase
protected JPanel	srcDatabasePanel
protected StorageSOPClassSCPDispatcher	storageSOPClassSCPDispatcher
protected static int	textFieldLengthForQueryPatientID
protected static int	textFieldLengthForQueryPatientName
protected static int	textFieldLengthForQueryStudyDate
protected static String	validateButtonLabel
protected static String	validateButtonToolTipText
protected static DicomSRValidator	validator
protected static int	validatorFrameHeightWanted
protected static int	validatorFrameWidthWanted
protected static String	viewButtonLabel
protected static String	viewButtonToolTipText
protected static int	viewerFrameHeightWanted
protected static int	viewerFrameWidthWanted

Fields inherited from class com.pixelmed.display.ApplicationFrame

statusBarManager

Fields inherited from class javax.swing.JFrame

accessibleContext, EXIT_ON_CLOSE, rootPane, rootPaneCheckingEnabled

Fields inherited from class java.awt.Frame

CROSSHAIR_CURSOR, DEFAULT_CURSOR, E_RESIZE_CURSOR, HAND_CURSOR, ICONIFIED, MAXIMIZED_BOTH, MAXIMIZED_HORIZ, MAXIMIZED_VERT, MOVE_CURSOR, N_RESIZE_CURSOR, NE_RESIZE_CURSOR, NORMAL, NW_RESIZE_CURSOR, S_RESIZE_CURSOR, SE_RESIZE_CURSOR, SW_RESIZE_CURSOR, TEXT_CURSOR, W_RESIZE_CURSOR, WAIT_CURSOR

Fields inherited from class java.awt.Component

BOTTOM_ALIGNMENT, CENTER_ALIGNMENT, LEFT_ALIGNMENT, RIGHT_ALIGNMENT, TOP_ALIGNMENT

Fields inherited from interface javax.swing.WindowConstants

DISPOSE_ON_CLOSE, DO_NOTHING_ON_CLOSE, HIDE_ON_CLOSE

Fields inherited from interface java.awt.image.ImageObserver

ABORT, ALLBITS, ERROR, FRAMEBITS, HEIGHT, PROPERTIES, SOMEBITS, WIDTH

Constructor Summary

DoseUtility(String title)

Method Summary

protected void	activateStorageSCP() Start DICOM storage listener for populating source database.
protected void	activateTemporaryDatabases() Start local database.
protected Vector<String>	deidentifyFiles(Vector<String> paths)
protected Vector	extractRadiationDoseSRFiles(Vector candidatePaths)
static ArrayList<QueryTreeRecord>	findCTSeriesAndRelatedRecordsInQueryTree(QueryTreeRecord record, ArrayList<QueryTreeRecord> records)
static ArrayList<QueryTreeRecord>	findDoseSeriesRecordsInQueryTree(QueryTreeRecord record, ArrayList<QueryTreeRecord> records)
protected void	generateDoseReportInformation(DatabaseTreeRecord[] databaseSelections, JEditorPane reportPane, StringBuffer textBuffer, boolean doHTML, MessageLogger logger, SafeProgressBarUpdaterThread progressBarUpdater, int done, int maximum)
protected void	generateDoseReportInformation(DatabaseTreeRecord databaseSelection, JEditorPane reportPane, StringBuffer textBuffer, boolean doHTML, MessageLogger logger, SafeProgressBarUpdaterThread progressBarUpdater, int done, int maximum)
protected void	generateDoseSR(DatabaseInformationModel srcDatabase, DatabaseTreeRecord[] databaseSelections, MessageLogger logger, SafeProgressBarUpdaterThread progressBarUpdater, int done, int maximum)
protected void	generateDoseSR(DatabaseInformationModel srcDatabase, DatabaseTreeRecord databaseSelection, MessageLogger logger, SafeProgressBarUpdaterThread progressBarUpdater, int done, int maximum)
protected Vector	getCurrentSourceFilePathSelections()
protected static String	getOriginDescriptionForLog(CTDose ctDose, DatabaseInformationModel srcDatabase)
static String	getQueryRetrieveAEFromIdentifier(AttributeList identifier, QueryInformationModel queryInformationModel)
static String	getQueryRetrieveLevel(AttributeList identifier, Attribute uniqueKey)
protected static String	getSRDescriptionForLog(AttributeList list)
protected boolean	haveJPEG2000Part1Codec()
protected boolean	haveJPEGLosslessCodec()
protected static void	importFileIntoDatabase(DatabaseInformationModel database, String dicomFileName, String fileRefererenceType)
static void	main(String[] arg) The method to invoke the application.
protected void	performRetrieve(AttributeList uniqueKeys, String selectionLevel, String retrieveAE)
protected void	purgeFilesAndDatabaseInformation(DatabaseTreeRecord[] databaseSelections, MessageLogger logger, SafeProgressBarUpdaterThread progressBarUpdater, int done, int maximum)
protected void	purgeFilesAndDatabaseInformation(DatabaseTreeRecord databaseSelection, MessageLogger logger, SafeProgressBarUpdaterThread progressBarUpdater, int done, int maximum)
static void	recurseThroughChildrenGatheringFileNamesOfDoseFiles(DatabaseTreeRecord r, Vector names, boolean onlyDoseFiles, String manufacturer) Recursively process the specified DatabaseTreeRecord and all its children finding file paths of possible dose-related files (not the reconstructed image files) at the instance level.
static void	recurseThroughChildrenGatheringFileNamesOfSRFiles(DatabaseTreeRecord r, Vector names) Recursively process the specified DatabaseTreeRecord and all its children finding file paths of SR files at the instance level.
protected void	setCurrentRemoteQueryInformationModel(String remoteAEForQuery)

Methods inherited from class com.pixelmed.display.ApplicationFrame

createGUI, getApplicationPropertyFileName, getBuildDate, getProperties, getPropertyInsistently, getPropertyInsistently, getReleaseString, getStatusBar, loadProperties, makePathToFileInUsersHomeDirectory, setApplicationPropertyFileName, setBackgroundForGUI, setInternationalizedFontsForGUI, setPreferredLookAndFeelForPlatform, storeProperties, takeSnapShot

Methods inherited from class javax.swing.JFrame

addImpl, createRootPane, frameInit, getAccessibleContext, getContentPane, getDefaultCloseOperation, getGlassPane, getGraphics, getJMenuBar, getLayeredPane, getRootPane, getTransferHandler, isDefaultLookAndFeelDecorated, isRootPaneCheckingEnabled, paramString, processWindowEvent, remove, repaint, setContentPane, setDefaultCloseOperation, setDefaultLookAndFeelDecorated, setGlassPane, setIconImage, setJMenuBar, setLayeredPane, setLayout, setRootPane, setRootPaneCheckingEnabled, setTransferHandler, update

Methods inherited from class java.awt.Frame

addNotify, getCursorType, getExtendedState, getFrames, getIconImage, getMaximizedBounds, getMenuBar, getState, getTitle, isResizable, isUndecorated, remove, removeNotify, setCursor, setExtendedState, setMaximizedBounds, setMenuBar, setResizable, setState, setTitle, setUndecorated

Methods inherited from class java.awt.Window

addPropertyChangeListener, addPropertyChangeListener, addWindowFocusListener, addWindowListener, addWindowStateListener, applyResourceBundle, applyResourceBundle, createBufferStrategy, createBufferStrategy, dispose, getBufferStrategy, getFocusableWindowState, getFocusCycleRootAncestor, getFocusOwner, getFocusTraversalKeys, getGraphicsConfiguration, getIconImages, getInputContext, getListeners, getLocale, getModalExclusionType, getMostRecentFocusOwner, getOwnedWindows, getOwner, getOwnerlessWindows, getToolkit, getWarningString, getWindowFocusListeners, getWindowListeners, getWindows, getWindowStateListeners, hide, isActive, isAlwaysOnTop, isAlwaysOnTopSupported, isFocusableWindow, isFocusCycleRoot, isFocused, isLocationByPlatform, isShowing, pack, postEvent, processEvent, processWindowFocusEvent, processWindowStateEvent, removeWindowFocusListener, removeWindowListener, removeWindowStateListener, reshape, setAlwaysOnTop, setBounds, setBounds, setCursor, setFocusableWindowState, setFocusCycleRoot, setIconImages, setLocationByPlatform, setLocationRelativeTo, setMinimumSize, setModalExclusionType, setSize, setSize, setVisible, show, toBack, toFront

Methods inherited from class java.awt.Container

add, add, add, add, add, addContainerListener, applyComponentOrientation, areFocusTraversalKeysSet, countComponents, deliverEvent, doLayout, findComponentAt, findComponentAt, getAlignmentX, getAlignmentY, getComponent, getComponentAt, getComponentAt, getComponentCount, getComponents, getComponentZOrder, getContainerListeners, getFocusTraversalPolicy, getInsets, getLayout, getMaximumSize, getMinimumSize, getMousePosition, getPreferredSize, insets, invalidate, isAncestorOf, isFocusCycleRoot, isFocusTraversalPolicyProvider, isFocusTraversalPolicySet, layout, list, list, locate, minimumSize, paint, paintComponents, preferredSize, print, printComponents, processContainerEvent, remove, removeAll, removeContainerListener, setComponentZOrder, setFocusTraversalKeys, setFocusTraversalPolicy, setFocusTraversalPolicyProvider, setFont, transferFocusDownCycle, validate, validateTree

Methods inherited from class java.awt.Component

action, add, addComponentListener, addFocusListener, addHierarchyBoundsListener, addHierarchyListener, addInputMethodListener, addKeyListener, addMouseListener, addMouseMotionListener, addMouseWheelListener, bounds, checkImage, checkImage, coalesceEvents, contains, contains, createImage, createImage, createVolatileImage, createVolatileImage, disable, disableEvents, dispatchEvent, enable, enable, enableEvents, enableInputMethods, firePropertyChange, firePropertyChange, firePropertyChange, firePropertyChange, firePropertyChange, firePropertyChange, firePropertyChange, firePropertyChange, firePropertyChange, getBackground, getBaseline, getBaselineResizeBehavior, getBounds, getBounds, getColorModel, getComponentListeners, getComponentOrientation, getCursor, getDropTarget, getFocusListeners, getFocusTraversalKeysEnabled, getFont, getFontMetrics, getForeground, getHeight, getHierarchyBoundsListeners, getHierarchyListeners, getIgnoreRepaint, getInputMethodListeners, getInputMethodRequests, getKeyListeners, getLocation, getLocation, getLocationOnScreen, getMouseListeners, getMouseMotionListeners, getMousePosition, getMouseWheelListeners, getName, getParent, getPeer, getPropertyChangeListeners, getPropertyChangeListeners, getSize, getSize, getTreeLock, getWidth, getX, getY, gotFocus, handleEvent, hasFocus, imageUpdate, inside, isBackgroundSet, isCursorSet, isDisplayable, isDoubleBuffered, isEnabled, isFocusable, isFocusOwner, isFocusTraversable, isFontSet, isForegroundSet, isLightweight, isMaximumSizeSet, isMinimumSizeSet, isOpaque, isPreferredSizeSet, isValid, isVisible, keyDown, keyUp, list, list, list, location, lostFocus, mouseDown, mouseDrag, mouseEnter, mouseExit, mouseMove, mouseUp, move, nextFocus, paintAll, prepareImage, prepareImage, printAll, processComponentEvent, processFocusEvent, processHierarchyBoundsEvent, processHierarchyEvent, processInputMethodEvent, processKeyEvent, processMouseEvent, processMouseMotionEvent, processMouseWheelEvent, removeComponentListener, removeFocusListener, removeHierarchyBoundsListener, removeHierarchyListener, removeInputMethodListener, removeKeyListener, removeMouseListener, removeMouseMotionListener, removeMouseWheelListener, removePropertyChangeListener, removePropertyChangeListener, repaint, repaint, repaint, requestFocus, requestFocus, requestFocusInWindow, requestFocusInWindow, resize, resize, setBackground, setComponentOrientation, setDropTarget, setEnabled, setFocusable, setFocusTraversalKeysEnabled, setForeground, setIgnoreRepaint, setLocale, setLocation, setLocation, setMaximumSize, setName, setPreferredSize, show, size, toString, transferFocus, transferFocusBackward, transferFocusUpCycle

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, wait, wait, wait

Methods inherited from interface java.awt.MenuContainer

getFont, postEvent

Field Detail

propertiesFileName

protected static String propertiesFileName

propertyName_DicomCurrentlySelectedStorageTargetAE

protected static String propertyName_DicomCurrentlySelectedStorageTargetAE

propertyName_DicomCurrentlySelectedQueryTargetAE

protected static String propertyName_DicomCurrentlySelectedQueryTargetAE

propertyName_CurrentlySelectedDoseRegistry

protected static String propertyName_CurrentlySelectedDoseRegistry

localDatabaseName

protected static String localDatabaseName

localDatabaseServerName

protected static String localDatabaseServerName

textFieldLengthForQueryPatientName

protected static int textFieldLengthForQueryPatientName

textFieldLengthForQueryPatientID

protected static int textFieldLengthForQueryPatientID

textFieldLengthForQueryStudyDate

protected static int textFieldLengthForQueryStudyDate

queryIntroductionLabelText

protected static String queryIntroductionLabelText

queryPatientNameLabelText

protected static String queryPatientNameLabelText

queryPatientIDLabelText

protected static String queryPatientIDLabelText

queryStudyDateLabelText

protected static String queryStudyDateLabelText

configureButtonLabel

protected static String configureButtonLabel

logButtonLabel

protected static String logButtonLabel

queryButtonLabel

protected static String queryButtonLabel

retrieveButtonLabel

protected static String retrieveButtonLabel

importButtonLabel

protected static String importButtonLabel

viewButtonLabel

protected static String viewButtonLabel

validateButtonLabel

protected static String validateButtonLabel

reportButtonLabel

protected static String reportButtonLabel

makeSRButtonLabel

protected static String makeSRButtonLabel

sendButtonLabel

protected static String sendButtonLabel

registryButtonLabel

protected static String registryButtonLabel

purgeButtonLabel

protected static String purgeButtonLabel

configureButtonToolTipText

protected static String configureButtonToolTipText

logButtonToolTipText

protected static String logButtonToolTipText

queryButtonToolTipText

protected static String queryButtonToolTipText

retrieveButtonToolTipText

protected static String retrieveButtonToolTipText

importButtonToolTipText

protected static String importButtonToolTipText

viewButtonToolTipText

protected static String viewButtonToolTipText

validateButtonToolTipText

protected static String validateButtonToolTipText

reportButtonToolTipText

protected static String reportButtonToolTipText

makeSRButtonToolTipText

protected static String makeSRButtonToolTipText

sendButtonToolTipText

protected static String sendButtonToolTipText

registryButtonToolTipText

protected static String registryButtonToolTipText

purgeButtonToolTipText

protected static String purgeButtonToolTipText

queryPatientNameToolTipText

protected static String queryPatientNameToolTipText

queryPatientIDToolTipText

protected static String queryPatientIDToolTipText

queryStudyDateToolTipText

protected static String queryStudyDateToolTipText

retrieveOnlyDoseSeriesRecordLabelText

protected static String retrieveOnlyDoseSeriesRecordLabelText

processOnlyDoseSeriesRecordLabelText

protected static String processOnlyDoseSeriesRecordLabelText

showOnlyDoseSummaryLabelText

protected static String showOnlyDoseSummaryLabelText

showDetailedLogLabelText

protected static String showDetailedLogLabelText

reportTabularLayoutLabelText

protected static String reportTabularLayoutLabelText

caseSensitiveCodeMeaningValidationLabelText

protected static String caseSensitiveCodeMeaningValidationLabelText

deidentifyWhenSendingToRegistryLabelText

protected static String deidentifyWhenSendingToRegistryLabelText

reportTitleMessage

protected static String reportTitleMessage

loggerTitleMessage

protected static String loggerTitleMessage

viewerFrameWidthWanted

protected static int viewerFrameWidthWanted

viewerFrameHeightWanted

protected static int viewerFrameHeightWanted

validatorFrameWidthWanted

protected static int validatorFrameWidthWanted

validatorFrameHeightWanted

protected static int validatorFrameHeightWanted

reportDialogWidthWanted

protected static int reportDialogWidthWanted

reportDialogHeightWanted

protected static int reportDialogHeightWanted

loggertDialogWidthWanted

protected static int loggertDialogWidthWanted

loggerDialogHeightWanted

protected static int loggerDialogHeightWanted

srcDatabase

protected DatabaseInformationModel srcDatabase

srcDatabasePanel

protected JPanel srcDatabasePanel

remoteQueryRetrievePanel

protected JPanel remoteQueryRetrievePanel

retrieveOnlyDoseSeriesRecordCheckBox

protected JCheckBox retrieveOnlyDoseSeriesRecordCheckBox

processOnlyDoseSeriesRecordCheckBox

protected JCheckBox processOnlyDoseSeriesRecordCheckBox

showOnlyDoseSummaryCheckBox

protected JCheckBox showOnlyDoseSummaryCheckBox

showDetailedLogCheckBox

protected JCheckBox showDetailedLogCheckBox

reportTabularLayoutCheckBox

protected JCheckBox reportTabularLayoutCheckBox

caseSensitiveCodeMeaningValidationCheckBox

protected JCheckBox caseSensitiveCodeMeaningValidationCheckBox

deidentifyWhenSendingToRegistryCheckBox

protected JCheckBox deidentifyWhenSendingToRegistryCheckBox

queryFilterPatientNameTextField

protected JTextField queryFilterPatientNameTextField

queryFilterPatientIDTextField

protected JTextField queryFilterPatientIDTextField

queryFilterStudyDateTextField

protected JTextField queryFilterStudyDateTextField

progressBarUpdater

protected SafeProgressBarUpdaterThread progressBarUpdater

cursorChanger

protected SafeCursorChanger cursorChanger

logger

protected MessageLogger logger

networkApplicationProperties

protected NetworkApplicationProperties networkApplicationProperties

networkApplicationInformation

protected NetworkApplicationInformation networkApplicationInformation

ftpApplicationProperties

protected FTPApplicationProperties ftpApplicationProperties

ftpRemoteHostInformation

protected FTPRemoteHostInformation ftpRemoteHostInformation

currentRemoteQueryInformationModel

protected QueryInformationModel currentRemoteQueryInformationModel

currentRemoteQueryTreeBrowser

protected QueryTreeBrowser currentRemoteQueryTreeBrowser

ourCalledAETitle

protected String ourCalledAETitle

validator

protected static DicomSRValidator validator

haveScannedForCodecs

protected static boolean haveScannedForCodecs

haveCheckedForJPEGLosslessCodec

protected static boolean haveCheckedForJPEGLosslessCodec

haveFoundJPEGLosslessCodec

protected static boolean haveFoundJPEGLosslessCodec

haveCheckedForJPEG2000Part1Codec

protected static boolean haveCheckedForJPEG2000Part1Codec

haveFoundJPEG2000Part1Codec

protected static boolean haveFoundJPEG2000Part1Codec

savedImagesFolder

protected File savedImagesFolder

storageSOPClassSCPDispatcher

protected StorageSOPClassSCPDispatcher storageSOPClassSCPDispatcher

currentDatabaseTreeRecordSelections

protected DatabaseTreeRecord[] currentDatabaseTreeRecordSelections

importDirectoryPath

protected String importDirectoryPath

Constructor Detail

DoseUtility

public DoseUtility(String title)
            throws DicomException,
                   IOException

Throws:

DicomException

IOException

Method Detail

haveJPEGLosslessCodec

protected boolean haveJPEGLosslessCodec()

haveJPEG2000Part1Codec

protected boolean haveJPEG2000Part1Codec()

setCurrentRemoteQueryInformationModel

protected void setCurrentRemoteQueryInformationModel(String remoteAEForQuery)

importFileIntoDatabase

protected static void importFileIntoDatabase(DatabaseInformationModel database,
                                             String dicomFileName,
                                             String fileRefererenceType)
                                      throws FileNotFoundException,
                                             IOException,
                                             DicomException

Throws:

FileNotFoundException

IOException

DicomException

activateStorageSCP

protected void activateStorageSCP()
                           throws DicomException,
                                  IOException

Start DICOM storage listener for populating source database.

Throws:

DicomException

IOException

activateTemporaryDatabases

protected void activateTemporaryDatabases()
                                   throws DicomException

Start local database.

Will not persist when the application is closed, so in memory database is used and instances live in the temporary filesystem.

Throws:

DicomException

getCurrentSourceFilePathSelections

protected Vector getCurrentSourceFilePathSelections()

recurseThroughChildrenGatheringFileNamesOfDoseFiles

public static void recurseThroughChildrenGatheringFileNamesOfDoseFiles(DatabaseTreeRecord r,
                                                                       Vector names,
                                                                       boolean onlyDoseFiles,
                                                                       String manufacturer)

Recursively process the specified DatabaseTreeRecord and all its children finding file paths of possible dose-related files (not the reconstructed image files) at the instance level.

Based on the method in DatabaseTreeBrowser, modified to filter by database record type.

Parameters:

r - the current DatabaseTreeRecord to process

names - the file names (paths) to add to

onlyDoseFiles - if true, only process dose-related files (not the reconstructed image files)

manufacturer - passed from series level down to instance

recurseThroughChildrenGatheringFileNamesOfSRFiles

public static void recurseThroughChildrenGatheringFileNamesOfSRFiles(DatabaseTreeRecord r,
                                                                     Vector names)

Recursively process the specified DatabaseTreeRecord and all its children finding file paths of SR files at the instance level.

Based on the method in DatabaseTreeBrowser, modified to filter by database record type.

Parameters:

r - the current DatabaseTreeRecord to process

names - the file names (paths) to add to

extractRadiationDoseSRFiles

protected Vector extractRadiationDoseSRFiles(Vector candidatePaths)

generateDoseReportInformation

protected void generateDoseReportInformation(DatabaseTreeRecord[] databaseSelections,
                                             JEditorPane reportPane,
                                             StringBuffer textBuffer,
                                             boolean doHTML,
                                             MessageLogger logger,
                                             SafeProgressBarUpdaterThread progressBarUpdater,
                                             int done,
                                             int maximum)
                                      throws DicomException,
                                             IOException

Throws:

DicomException

IOException

generateDoseReportInformation

protected void generateDoseReportInformation(DatabaseTreeRecord databaseSelection,
                                             JEditorPane reportPane,
                                             StringBuffer textBuffer,
                                             boolean doHTML,
                                             MessageLogger logger,
                                             SafeProgressBarUpdaterThread progressBarUpdater,
                                             int done,
                                             int maximum)
                                      throws DicomException,
                                             IOException

Throws:

DicomException

IOException

purgeFilesAndDatabaseInformation

protected void purgeFilesAndDatabaseInformation(DatabaseTreeRecord[] databaseSelections,
                                                MessageLogger logger,
                                                SafeProgressBarUpdaterThread progressBarUpdater,
                                                int done,
                                                int maximum)
                                         throws DicomException,
                                                IOException

Throws:

DicomException

IOException

purgeFilesAndDatabaseInformation

protected void purgeFilesAndDatabaseInformation(DatabaseTreeRecord databaseSelection,
                                                MessageLogger logger,
                                                SafeProgressBarUpdaterThread progressBarUpdater,
                                                int done,
                                                int maximum)
                                         throws DicomException,
                                                IOException

Throws:

DicomException

IOException

getSRDescriptionForLog

protected static String getSRDescriptionForLog(AttributeList list)

getOriginDescriptionForLog

protected static String getOriginDescriptionForLog(CTDose ctDose,
                                                   DatabaseInformationModel srcDatabase)
                                            throws DicomException

Throws:

DicomException

generateDoseSR

protected void generateDoseSR(DatabaseInformationModel srcDatabase,
                              DatabaseTreeRecord[] databaseSelections,
                              MessageLogger logger,
                              SafeProgressBarUpdaterThread progressBarUpdater,
                              int done,
                              int maximum)
                       throws DicomException,
                              IOException

Throws:

DicomException

IOException

generateDoseSR

protected void generateDoseSR(DatabaseInformationModel srcDatabase,
                              DatabaseTreeRecord databaseSelection,
                              MessageLogger logger,
                              SafeProgressBarUpdaterThread progressBarUpdater,
                              int done,
                              int maximum)
                       throws DicomException,
                              IOException

Throws:

DicomException

IOException

deidentifyFiles

protected Vector<String> deidentifyFiles(Vector<String> paths)
                                  throws DicomException,
                                         IOException

Throws:

DicomException

IOException

getQueryRetrieveAEFromIdentifier

public static String getQueryRetrieveAEFromIdentifier(AttributeList identifier,
                                                      QueryInformationModel queryInformationModel)

getQueryRetrieveLevel

public static String getQueryRetrieveLevel(AttributeList identifier,
                                           Attribute uniqueKey)

performRetrieve

protected void performRetrieve(AttributeList uniqueKeys,
                               String selectionLevel,
                               String retrieveAE)

findDoseSeriesRecordsInQueryTree

public static ArrayList<QueryTreeRecord> findDoseSeriesRecordsInQueryTree(QueryTreeRecord record,
                                                                          ArrayList<QueryTreeRecord> records)

findCTSeriesAndRelatedRecordsInQueryTree

public static ArrayList<QueryTreeRecord> findCTSeriesAndRelatedRecordsInQueryTree(QueryTreeRecord record,
                                                                                  ArrayList<QueryTreeRecord> records)

main

public static void main(String[] arg)

The method to invoke the application.

Parameters:

arg - none