com.pixelmed.apps
Class DoseReporterWithLegacyOCRAndAutoSendToRegistry

java.lang.Object
  com.pixelmed.apps.DoseReporterWithLegacyOCRAndAutoSendToRegistry

public class DoseReporterWithLegacyOCRAndAutoSendToRegistry
extends Object

A class to wait for incoming dose screen images and SRs and send them to pre-configured registry.

The class has no public methods other than the constructor and a main method that is useful as a utility.

External (unsecure) SQL access to the database is possible if the Application.DatabaseServerName property is specified; further details are described in com.pixelmed.database.DatabaseInformationModel; for example:

% java -cp lib/additional/hsqldb.jar org.hsqldb.util.DatabaseManagerSwing --url "jdbc:hsqldb:hsql://localhost/testserverdb"
 

For how to configure the necessary properties file, see:

See Also:

NetworkApplicationProperties, DatabaseApplicationProperties

Nested Class Summary

protected class	DoseReporterWithLegacyOCRAndAutoSendToRegistry.CandidateFile
protected class	DoseReporterWithLegacyOCRAndAutoSendToRegistry.OurPatientStudySeriesInstanceModel
protected class	DoseReporterWithLegacyOCRAndAutoSendToRegistry.OurReceivedObjectHandler
protected class	DoseReporterWithLegacyOCRAndAutoSendToRegistry.ReceivedFileProcessor
protected class	DoseReporterWithLegacyOCRAndAutoSendToRegistry.WatchDatabaseAndSendToRegistry
protected class	DoseReporterWithLegacyOCRAndAutoSendToRegistry.WatchRemoteAEsForNewDoseInformation

Field Summary

protected int	applicationDebugLevel
protected String	buildDate
protected DatabaseInformationModel	databaseInformationModel
protected static int	daysBackwardsFromTodayToQuery
protected String	defaultDaysBackwardsFromTodayToQuery
protected String	defaultIntervalAfterLastInstanceReceivedToWaitBeforeProcessingStudy
protected static String	defaultPropertiesFileName
protected String	defaultRetainDeidentifiedFiles
protected String	defaultRetainGeneratedRDSRFiles
protected String	defaultRetainSourceFilesUsedForSRGeneration
protected String	defaultSleepTimeBetweenPassesToProcessReceivedFiles
protected String	defaultSleepTimeBetweenPassesToQueryRemoteAEs
protected int	ftpClientDebugLevel
protected String	imageTypeColumnName
protected String	instanceCreatorUIDColumnName
protected String	instanceHasBeenSentToRegistryColumnName
protected String	instanceIsExposureDoseSequenceColumnName
protected String	instanceIsRadiationDoseScreenColumnName
protected String	instanceIsRadiationDoseSRColumnName
protected String	instanceLocalFileNameColumnName
protected String	instanceLocalFileReferenceTypeColumnName
protected String	instanceLocalParentReferenceColumnName
protected String	instanceLocalPrimaryKeyColumnName
protected static int	intervalAfterLastInstanceReceivedToWaitBeforeProcessingStudy
protected String	manufacturerColumnName
protected static long	millisecondsPerDay
protected NetworkApplicationInformationFederated	networkApplicationInformation
protected NetworkApplicationProperties	networkApplicationProperties
protected int	ocrDebugLevel
protected String	ourCalledAETitle
protected Properties	properties
protected static String	propertyDelimitersForTokenizer_RemoteAEsForQuery
protected static String	propertyName_ApplicationDebugLevel
protected static String	propertyName_DaysBackwardsFromTodayToQuery
protected static String	propertyName_IntervalAfterLastInstanceReceivedToWaitBeforeProcessingStudy
protected static String	propertyName_OCRDebugLevel
protected static String	propertyName_RemoteAEsForQuery
protected static String	propertyName_RetainDeidentifiedFiles
protected static String	propertyName_RetainGeneratedRDSRFiles
protected static String	propertyName_RetainSourceFilesUsedForSRGeneration
protected static String	propertyName_SelectedDoseRegistry
protected static String	propertyName_SleepTimeBetweenPassesToProcessReceivedFiles
protected static String	propertyName_SleepTimeBetweenPassesToQueryRemoteAEs
protected List<String>	remoteAEsForQuery
protected FTPRemoteHost	remoteHost
protected boolean	retainDeidentifiedFiles
protected boolean	retainGeneratedRDSRFiles
protected boolean	retainSourceFilesUsedForSRGeneration
protected File	savedImagesFolder
protected static int	sleepTimeBetweenPassesToProcessReceivedFiles
protected static int	sleepTimeBetweenPassesToQueryRemoteAEs
protected String	sopClassUIDColumnName
protected String	sourceApplicationEntityTitleColumnName
protected StoredFilePathStrategy	storedFilePathStrategy
protected String	studyHasBeenProcessedColumnName
protected String	studyInstanceUIDColumnName

Constructor Summary

DoseReporterWithLegacyOCRAndAutoSendToRegistry(String propertiesFileName)
Wait for incoming dose screen images and SRs and send to registry.

Method Summary

protected boolean	alreadyHaveIt(AttributeList uniqueKeys)
protected String	deidentifyFile(String dicomFileName)
protected void	deleteFilesAndDatabaseRecords(Set<DoseReporterWithLegacyOCRAndAutoSendToRegistry.CandidateFile> setOfFiles)
protected void	deleteFilesAndSetDatabaseRecordsToReferenced(Set<DoseReporterWithLegacyOCRAndAutoSendToRegistry.CandidateFile> setOfFiles)
protected long	findCandidateFilesToSendToRegistry(InformationEntity ie, String localPrimaryKeyValue, Set<DoseReporterWithLegacyOCRAndAutoSendToRegistry.CandidateFile> setOfOriginalSRFiles, Set<DoseReporterWithLegacyOCRAndAutoSendToRegistry.CandidateFile> setOfLegacyOCRSRFiles, Set<DoseReporterWithLegacyOCRAndAutoSendToRegistry.CandidateFile> setOfDoseScreenFiles, long mostRecentInsertionTime)
protected boolean	findSuitableSRFilesAndSendThemToRegistry(String studyLocalPrimaryKeyValue)
protected String	getBuildDate() Get the date the package was built.
protected void	loadProperties(String propertiesFileName) Load properties.
static void	main(String[] arg) Wait for incoming dose screen images and SRs and send to registry.
protected void	makeSRFileAndSendFileToRegistry(CTDose ctDose)
protected void	sendFilesToRegistry(Set<DoseReporterWithLegacyOCRAndAutoSendToRegistry.CandidateFile> setOfSRFiles)
protected void	sendFileToRegistry(DoseReporterWithLegacyOCRAndAutoSendToRegistry.CandidateFile candidateFile)
protected void	sendFileToRegistry(String fileName)
protected void	setSelectedDatabaseRecordHasBeenSentToRegistry(String filename)
protected void	setSelectedDatabaseRecordIsExposureDoseSequence(String filename)
protected void	setSelectedDatabaseRecordIsRadiationDoseScreen(String filename)
protected void	setSelectedDatabaseRecordIsRadiationDoseSR(String filename)

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Field Detail

defaultPropertiesFileName

protected static String defaultPropertiesFileName

propertyName_SelectedDoseRegistry

protected static String propertyName_SelectedDoseRegistry

propertyName_SleepTimeBetweenPassesToProcessReceivedFiles

protected static String propertyName_SleepTimeBetweenPassesToProcessReceivedFiles

propertyName_IntervalAfterLastInstanceReceivedToWaitBeforeProcessingStudy

protected static String propertyName_IntervalAfterLastInstanceReceivedToWaitBeforeProcessingStudy

propertyName_SleepTimeBetweenPassesToQueryRemoteAEs

protected static String propertyName_SleepTimeBetweenPassesToQueryRemoteAEs

propertyName_DaysBackwardsFromTodayToQuery

protected static String propertyName_DaysBackwardsFromTodayToQuery

propertyName_RetainSourceFilesUsedForSRGeneration

protected static String propertyName_RetainSourceFilesUsedForSRGeneration

propertyName_RetainGeneratedRDSRFiles

protected static String propertyName_RetainGeneratedRDSRFiles

propertyName_RetainDeidentifiedFiles

protected static String propertyName_RetainDeidentifiedFiles

propertyName_RemoteAEsForQuery

protected static String propertyName_RemoteAEsForQuery

propertyName_ApplicationDebugLevel

protected static String propertyName_ApplicationDebugLevel

propertyName_OCRDebugLevel

protected static String propertyName_OCRDebugLevel

propertyDelimitersForTokenizer_RemoteAEsForQuery

protected static String propertyDelimitersForTokenizer_RemoteAEsForQuery

retainDeidentifiedFiles

protected boolean retainDeidentifiedFiles

retainGeneratedRDSRFiles

protected boolean retainGeneratedRDSRFiles

retainSourceFilesUsedForSRGeneration

protected boolean retainSourceFilesUsedForSRGeneration

defaultRetainDeidentifiedFiles

protected String defaultRetainDeidentifiedFiles

defaultRetainGeneratedRDSRFiles

protected String defaultRetainGeneratedRDSRFiles

defaultRetainSourceFilesUsedForSRGeneration

protected String defaultRetainSourceFilesUsedForSRGeneration

defaultSleepTimeBetweenPassesToProcessReceivedFiles

protected String defaultSleepTimeBetweenPassesToProcessReceivedFiles

defaultIntervalAfterLastInstanceReceivedToWaitBeforeProcessingStudy

protected String defaultIntervalAfterLastInstanceReceivedToWaitBeforeProcessingStudy

defaultSleepTimeBetweenPassesToQueryRemoteAEs

protected String defaultSleepTimeBetweenPassesToQueryRemoteAEs

defaultDaysBackwardsFromTodayToQuery

protected String defaultDaysBackwardsFromTodayToQuery

sleepTimeBetweenPassesToProcessReceivedFiles

protected static int sleepTimeBetweenPassesToProcessReceivedFiles

intervalAfterLastInstanceReceivedToWaitBeforeProcessingStudy

protected static int intervalAfterLastInstanceReceivedToWaitBeforeProcessingStudy

sleepTimeBetweenPassesToQueryRemoteAEs

protected static int sleepTimeBetweenPassesToQueryRemoteAEs

daysBackwardsFromTodayToQuery

protected static int daysBackwardsFromTodayToQuery

millisecondsPerDay

protected static final long millisecondsPerDay

See Also:

Constant Field Values

properties

protected Properties properties

networkApplicationProperties

protected NetworkApplicationProperties networkApplicationProperties

networkApplicationInformation

protected NetworkApplicationInformationFederated networkApplicationInformation

ourCalledAETitle

protected String ourCalledAETitle

remoteAEsForQuery

protected List<String> remoteAEsForQuery

databaseInformationModel

protected DatabaseInformationModel databaseInformationModel

remoteHost

protected FTPRemoteHost remoteHost

ftpClientDebugLevel

protected int ftpClientDebugLevel

ocrDebugLevel

protected int ocrDebugLevel

applicationDebugLevel

protected int applicationDebugLevel

buildDate

protected String buildDate

savedImagesFolder

protected File savedImagesFolder

storedFilePathStrategy

protected StoredFilePathStrategy storedFilePathStrategy

studyHasBeenProcessedColumnName

protected String studyHasBeenProcessedColumnName

instanceHasBeenSentToRegistryColumnName

protected String instanceHasBeenSentToRegistryColumnName

instanceIsRadiationDoseSRColumnName

protected String instanceIsRadiationDoseSRColumnName

instanceIsRadiationDoseScreenColumnName

protected String instanceIsRadiationDoseScreenColumnName

instanceIsExposureDoseSequenceColumnName

protected String instanceIsExposureDoseSequenceColumnName

studyInstanceUIDColumnName

protected String studyInstanceUIDColumnName

sopClassUIDColumnName

protected String sopClassUIDColumnName

manufacturerColumnName

protected String manufacturerColumnName

imageTypeColumnName

protected String imageTypeColumnName

instanceCreatorUIDColumnName

protected String instanceCreatorUIDColumnName

sourceApplicationEntityTitleColumnName

protected String sourceApplicationEntityTitleColumnName

instanceLocalParentReferenceColumnName

protected String instanceLocalParentReferenceColumnName

instanceLocalFileNameColumnName

protected String instanceLocalFileNameColumnName

instanceLocalFileReferenceTypeColumnName

protected String instanceLocalFileReferenceTypeColumnName

instanceLocalPrimaryKeyColumnName

protected String instanceLocalPrimaryKeyColumnName

Constructor Detail

DoseReporterWithLegacyOCRAndAutoSendToRegistry

public DoseReporterWithLegacyOCRAndAutoSendToRegistry(String propertiesFileName)
                                               throws DicomException,
                                                      DicomNetworkException,
                                                      IOException,
                                                      InterruptedException,
                                                      FTPException

Wait for incoming dose screen images and SRs and send to registry.

Parameters:

propertiesFileName -

Throws:

DicomException

DicomNetworkException

IOException

InterruptedException

FTPException

Method Detail

getBuildDate

protected String getBuildDate()

Get the date the package was built.

Returns:

the build date

loadProperties

protected void loadProperties(String propertiesFileName)
                       throws IOException

Load properties.

Throws:

IOException - thrown if properties file is missing

deidentifyFile

protected String deidentifyFile(String dicomFileName)
                         throws DicomException,
                                IOException

Throws:

DicomException

IOException

sendFileToRegistry

protected void sendFileToRegistry(String fileName)
                           throws DicomException,
                                  IOException,
                                  NoSuchAlgorithmException,
                                  Exception

Throws:

DicomException

IOException

NoSuchAlgorithmException

Exception

sendFileToRegistry

protected void sendFileToRegistry(DoseReporterWithLegacyOCRAndAutoSendToRegistry.CandidateFile candidateFile)
                           throws DicomException,
                                  IOException,
                                  NoSuchAlgorithmException,
                                  Exception

Throws:

DicomException

IOException

NoSuchAlgorithmException

Exception

sendFilesToRegistry

protected void sendFilesToRegistry(Set<DoseReporterWithLegacyOCRAndAutoSendToRegistry.CandidateFile> setOfSRFiles)
                            throws DicomException,
                                   IOException,
                                   NoSuchAlgorithmException,
                                   Exception

Throws:

DicomException

IOException

NoSuchAlgorithmException

Exception

makeSRFileAndSendFileToRegistry

protected void makeSRFileAndSendFileToRegistry(CTDose ctDose)

deleteFilesAndDatabaseRecords

protected void deleteFilesAndDatabaseRecords(Set<DoseReporterWithLegacyOCRAndAutoSendToRegistry.CandidateFile> setOfFiles)
                                      throws DicomException,
                                             IOException

Throws:

DicomException

IOException

deleteFilesAndSetDatabaseRecordsToReferenced

protected void deleteFilesAndSetDatabaseRecordsToReferenced(Set<DoseReporterWithLegacyOCRAndAutoSendToRegistry.CandidateFile> setOfFiles)
                                                     throws DicomException,
                                                            IOException

Throws:

DicomException

IOException

findCandidateFilesToSendToRegistry

protected long findCandidateFilesToSendToRegistry(InformationEntity ie,
                                                  String localPrimaryKeyValue,
                                                  Set<DoseReporterWithLegacyOCRAndAutoSendToRegistry.CandidateFile> setOfOriginalSRFiles,
                                                  Set<DoseReporterWithLegacyOCRAndAutoSendToRegistry.CandidateFile> setOfLegacyOCRSRFiles,
                                                  Set<DoseReporterWithLegacyOCRAndAutoSendToRegistry.CandidateFile> setOfDoseScreenFiles,
                                                  long mostRecentInsertionTime)
                                           throws DicomException

Throws:

DicomException

findSuitableSRFilesAndSendThemToRegistry

protected boolean findSuitableSRFilesAndSendThemToRegistry(String studyLocalPrimaryKeyValue)
                                                    throws DicomException,
                                                           IOException,
                                                           NoSuchAlgorithmException,
                                                           Exception

Throws:

DicomException

IOException

NoSuchAlgorithmException

Exception

setSelectedDatabaseRecordIsRadiationDoseSR

protected void setSelectedDatabaseRecordIsRadiationDoseSR(String filename)
                                                   throws DicomException

Throws:

DicomException

setSelectedDatabaseRecordIsRadiationDoseScreen

protected void setSelectedDatabaseRecordIsRadiationDoseScreen(String filename)
                                                       throws DicomException

Throws:

DicomException

setSelectedDatabaseRecordIsExposureDoseSequence

protected void setSelectedDatabaseRecordIsExposureDoseSequence(String filename)
                                                        throws DicomException

Throws:

DicomException

setSelectedDatabaseRecordHasBeenSentToRegistry

protected void setSelectedDatabaseRecordHasBeenSentToRegistry(String filename)
                                                       throws DicomException

Throws:

DicomException

alreadyHaveIt

protected boolean alreadyHaveIt(AttributeList uniqueKeys)
                         throws DicomException

Throws:

DicomException

main

public static void main(String[] arg)

Wait for incoming dose screen images and SRs and send to registry.

Parameters:

arg - none