pwiz::identdata::Serializer_Text Class Reference

Serializer_Text reads in and writes out an id file in tab format. More...

#include <Serializer_Text.hpp>

Classes
struct	Config
	< Controls the format of the text file. More...

Public Types
enum	IdField {   None =0, Scan =1, Rt =2, Mz =3,   Charge =4, Score =5, ScoreType =6, Peptide =7,   Protein =8, ProteinDescription =9, Last =ProteinDescription }
	List of fields available. More...

Public Member Functions
	Serializer_Text (const Config &config=Config())
	Constructor with Config. More...
void	write (std::ostream &os, const IdentData &mzid, const pwiz::util::IterationListenerRegistry *iterationListenerRegistry=0) const
	writes IdentData object to ostream as a text table More...
void	read (boost::shared_ptr< std::istream > is, IdentData &mzid) const
	read in IdentData object from a delimited text fromat. More...

Static Public Member Functions
static const std::string *	getIdFieldNames ()

Private Member Functions
	Serializer_Text (Serializer_Text &)
Serializer_Text &	operator= (Serializer_Text &)

Private Attributes
boost::shared_ptr< Impl >	impl_

Detailed Description

Serializer_Text reads in and writes out an id file in tab format.

Definition at line 38 of file Serializer_Text.hpp.

Member Enumeration Documentation

enum pwiz::identdata::Serializer_Text::IdField

List of fields available.

Enumerator
None
Scan
Rt
Mz
Charge
Score
ScoreType
Peptide
Protein
ProteinDescription
Last

Definition at line 42 of file Serializer_Text.hpp.

    {
        None=0,
        Scan=1,
        Rt=2,
        Mz=3,
        Charge=4,
        Score=5,
        ScoreType=6,
        Peptide=7,
        Protein=8,
        ProteinDescription=9,
        Last=ProteinDescription
    };

Constructor & Destructor Documentation

pwiz::identdata::Serializer_Text::Serializer_Text

(

const Config &

config = Config())

Constructor with Config.

pwiz::identdata::Serializer_Text::Serializer_Text ( Serializer_Text &  )

private

Member Function Documentation

static const std::string* pwiz::identdata::Serializer_Text::getIdFieldNames ( )

static

void pwiz::identdata::Serializer_Text::write	(	std::ostream &	os,
		const IdentData &	mzid,
		const pwiz::util::IterationListenerRegistry *	iterationListenerRegistry = 0
	)		const

writes IdentData object to ostream as a text table

Referenced by testSerializeWrite().

void pwiz::identdata::Serializer_Text::read	(	boost::shared_ptr< std::istream >	is,
		IdentData &	mzid
	)		const

read in IdentData object from a delimited text fromat.

Referenced by testSerializeRead().

Serializer_Text& pwiz::identdata::Serializer_Text::operator= ( Serializer_Text &  )

private

Member Data Documentation

boost::shared_ptr<Impl> pwiz::identdata::Serializer_Text::impl_

private

Definition at line 83 of file Serializer_Text.hpp.

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The documentation for this class was generated from the following file:

• /tmp/buildd/libpwiz-3.0.4624/pwiz/data/identdata/Serializer_Text.hpp