org.biojava.bio.structure.scop

Class ScopFactory

java.lang.Object

org.biojava.bio.structure.scop.ScopFactory

public class ScopFactory
extends java.lang.Object

Controls the global ScopDatabase being used.

Defaults to a RemoteScopInstallation, which is fast for small numbers of queries. For many queries, a ScopInstallation instance may be faster, since it makes only one network request.

Example: Fetch the structure corresponding to an old version of scop

 ScopInstallation scop = new ScopInstallation();
 scop.setScopVersion("1.69");
 ScopFactory.setScopDatabase(scop);
 AtomCache cache = new AtomCache();
 cache.setFetchFileEvenIfObsolete(true); //fetch older PDBs
 cache.setStrictSCOP(false); // correct simple errors in domain names
 Structure s = cache.getStructure("d3hbia_");

Author:

sbliven

Constructor Summary

Constructors

Constructor and Description
ScopFactory()

Method Summary

Methods

Modifier and Type	Method and Description
static ScopDatabase	getSCOP()
static void	setScopDatabase(ScopDatabase s)

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Constructor Detail

ScopFactory

public ScopFactory()

Method Detail

getSCOP

public static ScopDatabase getSCOP()

setScopDatabase

public static void setScopDatabase(ScopDatabase s)