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itkvtkPolyDataToGoFigureMeshAttributes.h
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1 /*=========================================================================
2  Authors: The GoFigure Dev. Team.
3  at Megason Lab, Systems biology, Harvard Medical school, 2009-11
4 
5  Copyright (c) 2009-11, President and Fellows of Harvard College.
6  All rights reserved.
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8  Redistribution and use in source and binary forms, with or without
9  modification, are permitted provided that the following conditions are met:
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12  this list of conditions and the following disclaimer.
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14  this list of conditions and the following disclaimer in the documentation
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17  nor the names of its contributors may be used to endorse or promote
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33 =========================================================================*/
34 #ifndef __itkvtkPolyDataToGoFigureMeshAttributes_h
35 #define __itkvtkPolyDataToGoFigureMeshAttributes_h
36 
37 #include "itkLightObject.h"
38 #include "itkvtkPolyDataToBinaryMaskImageFilter.h"
39 #include "itkBinaryMaskImageToGoFigureMeshAttributes.h"
40 #include "itkRegionOfInterestImageFilter.h"
41 #include "itkImageFileWriter.h"
42 
43 namespace itk
44 {
45 template< class TImage >
46 class vtkPolyDataToGoFigureMeshAttributes:public LightObject
47 {
48 public:
49  typedef vtkPolyDataToGoFigureMeshAttributes Self;
50  typedef LightObject Superclass;
51  typedef SmartPointer< Self > Pointer;
52  typedef SmartPointer< const Self > ConstPointer;
53 
54  typedef TImage ImageType;
55  typedef typename ImageType::Pointer ImagePointer;
56 
58  itkNewMacro(Self);
59 
61  itkTypeMacro(vtkPolyDataToGoFigureMeshAttributes, LightObject);
62 
63  typedef vtkPolyDataToBinaryMaskImageFilter< ImageType, ImageType >
64  PolyDataToBinaryMaskImageFilterType;
65  typedef typename PolyDataToBinaryMaskImageFilterType::Pointer
66  PolyDataToBinaryMaskImageFilterPointer;
67 
68  typedef BinaryMaskImageToGoFigureMeshAttributes< ImageType, ImageType >
69  BinaryMaskImageToGoFigureMeshAttributesType;
70  typedef typename BinaryMaskImageToGoFigureMeshAttributesType::Pointer
71  BinaryMaskImageToGoFigureMeshAttributesPointer;
72 
73  typedef RegionOfInterestImageFilter< ImageType, ImageType > ROIFilterType;
74  typedef typename ROIFilterType::Pointer ROIFilterPointer;
75 
76  typedef ImageFileWriter< ImageType > WriterType;
77 
78  virtual void SetImage(ImageType *iImage);
79 
80  virtual void SetPolyData(vtkPolyData *iMesh);
81 
82  void SetIntensityBasedComputation( const bool& iComputation );
83  virtual void Update();
84 
85  unsigned int GetSize();
86 
87  double GetPhysicalSize();
88 
89  double GetMeanIntensity();
90 
91  double GetSumIntensity();
92 
93  double GetArea();
94 
95 protected:
96  vtkPolyDataToGoFigureMeshAttributes();
97  ~vtkPolyDataToGoFigureMeshAttributes();
98 
99  vtkPolyData *m_Mesh;
100  ImagePointer m_Image;
101 
102  PolyDataToBinaryMaskImageFilterPointer m_Binarizer;
103  BinaryMaskImageToGoFigureMeshAttributesPointer m_AttributeCalculator;
104  ROIFilterPointer m_ROIFilter;
105 
106  unsigned int m_Size;
107  double m_PhysicalSize;
108  double m_Area;
109  double m_Mean;
110  double m_Sum;
111  bool m_IntensityComputation;
112 
113  virtual void GenerateData();
114 
115  void ComputeArea();
116 
117 private:
118  vtkPolyDataToGoFigureMeshAttributes(const Self &);
119  void operator=(const Self &);
120 };
121 }
122 
123 #include "itkvtkPolyDataToGoFigureMeshAttributes.txx"
124 #endif
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