itkMegaCaptureImport.h

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/*=========================================================================
 Authors: The GoFigure Dev. Team.
 at Megason Lab, Systems biology, Harvard Medical school, 2009-11

 Copyright (c) 2009-11, President and Fellows of Harvard College.
 All rights reserved.

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 this list of conditions and the following disclaimer.
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 and/or other materials provided with the distribution.
 Neither the name of the  President and Fellows of Harvard College
 nor the names of its contributors may be used to endorse or promote
 products derived from this software without specific prior written
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=========================================================================*/

#ifndef __itkMegaCaptureImport_h
#define __itkMegaCaptureImport_h

#include <vector>
#include <algorithm>
#include <string.h>

#include "itkLightProcessObject.h"

#include <itksys/SystemTools.hxx>
#include "itkRegularExpressionSeriesFileNames.h"

#include "GoFigureFileInfoMultiIndexContainerHelper.h"
#include "QGoIOConfigure.h"

// #include <QProgressBar>

namespace itk
{
class QGOIO_EXPORT MegaCaptureImport:public LightProcessObject
{
public:
  //typedef std::list<int>                     IntListType;
  typedef std::vector< int >                        IntVectorType;
  typedef std::pair< IntVectorType, IntVectorType > PairIntVectorType;
  typedef std::vector< std::string >                StringVectorType;

  typedef MegaCaptureImport Self;

  typedef LightProcessObject Superclass;

  typedef SmartPointer< Self >       Pointer;
  typedef SmartPointer< const Self > ConstPointer;

  itkTypeMacro(MegaCaptureImport, LightProcessObject);

  itkNewMacro(Self);

  void SetFileName(const std::string & iName);

  void SetTimeBased(const bool & iBool);

  void Glob();

  void CreateOutput();

  GoFigureFileInfoHelperMultiIndexContainer GetOutput();

  void Update();

  std::string GetHeaderFilename();

  static bool IsNewMegaCapture(const std::string & iFilename);

  static std::string CleanFileName(const std::string & iFilename);

  static PairIntVectorType GetStartAndLengthOfNumericalGroupFilename(
    const std::string & iFilename);

  static bool AreTheseNumericalGroupNewMegaCapture(
    PairIntVectorType StartAndLengthNumericalGroup);

protected:
  MegaCaptureImport();
  ~MegaCaptureImport();

  void OldMegaCaptureFile(GoFigureFileInfoHelper & ioTempInfo,
                          const std::vector< unsigned int > & iNumericalValues);

  void NewMegaCaptureFile(GoFigureFileInfoHelper & ioTempInfo,
                          const std::vector< unsigned int > & iNumericalValues);

private:
  MegaCaptureImport (const Self &); //purposely not implemented
  void operator=(const Self &);     //purposely not implemented

  PairIntVectorType                         m_StartAndLengthNumGroup;
  StringVectorType                          m_FileNameS;
  GoFigureFileInfoHelperMultiIndexContainer m_OutputFileList;
  std::string                               m_FileName;
  std::string                               m_fileNameModified;
  std::string                               m_HeaderFileName;

  int m_NbSignificantMegaCaptureNumGroup;
};
}

#endif