QGoSemiAutoSegmentationAlgo.h

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/*=========================================================================
 Authors: The GoFigure Dev. Team.
 at Megason Lab, Systems biology, Harvard Medical school, 2009-11

 Copyright (c) 2009-11, President and Fellows of Harvard College.
 All rights reserved.

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 this list of conditions and the following disclaimer.
 Redistributions in binary form must reproduce the above copyright notice,
 this list of conditions and the following disclaimer in the documentation
 and/or other materials provided with the distribution.
 Neither the name of the  President and Fellows of Harvard College
 nor the names of its contributors may be used to endorse or promote
 products derived from this software without specific prior written
 permission.

 THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS
 "AS IS" AND ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO,
 THE IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR
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=========================================================================*/
#ifndef __QGoSemiAutoSegmentationAlgo_h
#define __QGoSemiAutoSegmentationAlgo_h

#include "QGoSegmentationAlgo.h"
#include "QGoAlgorithmWidget.h"
#include "QGoGUILibConfigure.h"
#include "vtkSmartPointer.h"
#include "vtkPolyData.h"
#include "vtkImageData.h"
#include "QGoGUILibConfigure.h"

class GoImageProcessor;

class QGOGUILIB_EXPORT QGoSemiAutoSegmentationAlgo:public QGoSegmentationAlgo
{
  Q_OBJECT
public:
  explicit QGoSemiAutoSegmentationAlgo(std::vector< vtkPoints* >* iSeeds, QWidget *iParent = 0);
  virtual ~QGoSemiAutoSegmentationAlgo();


  virtual std::vector<vtkPolyData*> ApplyAlgo(
    GoImageProcessor* iImages,
    std::string iChannel,
    bool iIsInvertedOn = false) = 0;

protected:
  std::vector< vtkPoints* >*      m_Seeds;
  QGoAlgoParameter<double>*       m_Radius;

  virtual void SetAlgoWidget(QWidget* iParent = 0);


  virtual void DeleteParameters() = 0;

  /*
   * \brief Get boundingBox from a center and a radius
   * \param[in] iCenter center of the box
   * \param[in] iRadius radius of the box
   * \param[in] iOrientation 0-xy, 1-xz, 2-yz, 3-xyz
   * \return vector[6] containing the bounding box (xmin, xmax, ymin, imax, ...)
   */
  std::vector<double> GetBounds(
      const std::vector<double>& iCenter,
      const double& iRadius,
      const unsigned int& iOrientation = 3);

};

#endif