QGoDBMeshManager.h

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/*=========================================================================
 Authors: The GoFigure Dev. Team.
 at Megason Lab, Systems biology, Harvard Medical school, 2009-11

 Copyright (c) 2009-11, President and Fellows of Harvard College.
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#ifndef __QGoDBMeshManager_h
#define __QGoDBMeshManager_h

#include "QGoTableWidget.h"
#include "GoDBCollectionOfTraces.h"
#include "GoDBTWContainerForMesh.h"
#include "QGoDBTraceManager.h"
#include "GoDBMeshRow.h"
#include "MeshContainer.h"
#include "QGoGUILibConfigure.h"

class QGOGUILIB_EXPORT QGoDBMeshManager:public QGoDBTraceManager
{
  Q_OBJECT
public:
  QGoDBMeshManager(int iImgSessionID,
                   QWidget *iparent);
  ~QGoDBMeshManager();

  void SetMeshesInfoContainerForVisu(MeshContainer *iContainerForVisu);

  void DisplayInfoAndLoadVisuContainerForAllMeshes(vtkMySQLDatabase *iDatabaseConnector);

  void DisplayInfoAndLoadVisuContainerForAllMeshesForSpecificTPs(
    vtkMySQLDatabase *iDatabaseConnector, const std::list<unsigned int> & iListTPs);

  void AddInfoInTWAndVisuContainerForMeshesForSpecificTPs(
    vtkMySQLDatabase *iDatabaseConnector, const std::list<unsigned int> & iListTPs);

  void RemoveTracesFromTWAndContainerForVisuForSpecificTPs(
                                                    vtkMySQLDatabase *iDatabaseConnector,
                                                    const std::list<unsigned int> & iListTPs);

  virtual void DisplayInfoForLastCreatedTrace(vtkMySQLDatabase *iDatabaseConnector);

  void DisplayInfoForLastCreatedMesh(vtkMySQLDatabase *iDatabaseConnector,
                                     GoFigureMeshAttributes *iMeshAttributes);

  virtual void DisplayInfoForExistingTrace(vtkMySQLDatabase *iDatabaseConnector,
                                           int iTraceID);

  void DisplayInfoForExistingTraceForMesh(vtkMySQLDatabase *iDatabaseConnector,
                                          int iTraceID,
                                          GoFigureMeshAttributes *iMeshAttributes);

  void DisplayOnlyVolumeAreaForExistingMesh(GoFigureMeshAttributes *iMeshAttributes,
                                            unsigned iMeshID);

  unsigned int CreateNewMeshWithNoContourNoPoints(
    vtkMySQLDatabase *iDatabaseConnector);

  unsigned int SaveNewMeshFromVisu(unsigned int iXCoordMin,
                                   unsigned int iYCoordMin,
                                   unsigned int iZCoordMin,
                                   unsigned int iXCoordMax,
                                   unsigned int iYCoordMax,
                                   unsigned int iZCoordMax,
                                   int          iTShift,
                                   vtkPolyData *iTraceNodes,
                                   vtkMySQLDatabase *iDatabaseConnector,
                                   GoFigureMeshAttributes *iMeshAttributes);

  unsigned int SaveNewMeshFromVisu(unsigned int iXCoordMin,
                                   unsigned int iYCoordMin,
                                   unsigned int iZCoordMin,
                                   unsigned int iXCoordMax,
                                   unsigned int iYCoordMax,
                                   unsigned int iZCoordMax,
                                   int iTShift,
                                   vtkPolyData *iTraceNodes,
                                   vtkMySQLDatabase *iDatabaseConnector,
                                   GoFigureMeshAttributes *iMeshAttributes,
                                   unsigned int iTrackID);

  unsigned int SaveNewMeshWithNoTrackFromVisu(unsigned int iXCoordMin,
                                              unsigned int iYCoordMin,
                                              unsigned int iZCoordMin,
                                              unsigned int iXCoordMax,
                                              unsigned int iYCoordMax,
                                              unsigned int iZCoordMax,
                                              int iTShift,
                                              vtkPolyData *iTraceNodes,
                                              vtkMySQLDatabase *iDatabaseConnector,
                                              GoFigureMeshAttributes *iMeshAttributes);

  void SaveGeneratedMeshFromVisu(unsigned int iXCoordMin, unsigned int iYCoordMin,
                                 unsigned int iZCoordMin,
                                 unsigned int iXCoordMax, unsigned int iYCoordMax,
                                 unsigned int iZCoordMax, vtkPolyData *iTraceNodes,
                                 vtkMySQLDatabase *iDatabaseConnector,
                                 GoFigureMeshAttributes *iMeshAttributes);

  std::list< unsigned int > UpdateTheTracesColor(vtkMySQLDatabase *iDatabaseConnector);

  void UpdateBoundingBoxes(vtkMySQLDatabase *iDatabaseConnector,
                           const std::list< unsigned int > & iListTracesIDs);

  //virtual pure method in QGoDBTraceManager
  virtual void UpdateTWAndContainerForImportedTraces(
    const std::vector< int > & iVectorImportedTraces,
    vtkMySQLDatabase *iDatabaseConnector);

  //virtual pure method in QGoDBTraceManager
  virtual void DeleteCheckedTraces(vtkMySQLDatabase *iDatabaseConnector);

   //virtual pure method in QGoDBTraceManager
  virtual std::list< unsigned int > GetListHighlightedIDs();

  void SetSelectedCellType(std::string* iCellType);

  void SetSelectedSubCellType(std::string* iSubCellType);

  MeshContainer* GetMeshesInfoFromDBAndCreateContainerForVisu(
    vtkMySQLDatabase* iDatabaseConnector,
    const std::list< unsigned int > & iListCollectionIDs);

  //method in QGoDBTraceManager
  virtual std::list< NameWithColorData > GetAllTraceIDsWithColor(
    vtkMySQLDatabase *iDatabaseConnector, std::string & ioIDToSelect);

  std::list< std::pair<unsigned int, double> > GetListVolumes();

  std::list< std::pair<unsigned int, double> > GetListVolumes(
          const std::list<unsigned int> & iMeshIDs);

  double GetVolume(unsigned int iMeshID);

  void CleanTWAndContainerForGivenTimePoint(vtkMySQLDatabase *iDatabaseConnector,
                                            const std::list<unsigned int>& iTimePoints);

  void ModifyTrackIDInVisuContainer(unsigned int iTrackID,
                                    const std::list< unsigned int > & iToTrack,
                                    const std::list< unsigned int > & iToNull);


public slots:
  std::map<unsigned int,double*> GetMeshesInfoForImportedMesh(
  std::list<unsigned int> iMeshesIDs);

  unsigned int ReassignTrackIDForPreviousMeshWithSameTimePoint(
    vtkMySQLDatabase *iDatabaseConnector,unsigned int iTrackID,
    unsigned int iTimePoint);

  QString CheckExistingMeshesForTheTrack(
   unsigned int iTrackID, vtkMySQLDatabase* iDatabaseConnector, int iTCoord);//int iShift = 0);

  QString CheckExistingMeshesForTheTrack(
   unsigned int iTrackID,vtkMySQLDatabase* iDatabaseConnector,
   std::list<unsigned int> & ioListMeshIDs,
   std::list< unsigned int > & ioNullListMeshIDs);

  std::string CheckListMeshesFromDifferentTimePoints(
    vtkMySQLDatabase *iDatabaseConnector,
    std::list< unsigned int > iListMeshIDs,
    std::list<unsigned int> & ioListMeshIDsToBePartOfTrack,
    std::list<unsigned int> & ioListMeshIDsToReassign);

  std::list<unsigned int> GetMeshesWithTimePointInfToTheCheckedOne(
    unsigned int iTrackID, vtkMySQLDatabase* iDatabaseConnector,
    std::list<unsigned int> iListMeshesBelongingToTrack);

protected:
  GoDBTWContainerForMesh *m_TWContainer;
  MeshContainer          *m_MeshContainerInfoForVisu;
  std::string*            m_SelectedCellType;
  std::string*            m_SelectedSubCellType;

  //virtual pure method in QGoDBTraceManager
  virtual void SetCollectionsTraceNames();

  void PrintValuesForMeshWithNoPoints(unsigned int iTraceID);

  virtual void AddActionsContextMenu(QMenu *iMenu);

  //virtual pure method in QGoDBTraceManager
  virtual void DisplayInfoForAllTraces(vtkMySQLDatabase *iDatabaseConnector);

  //virtual pure method in QGoDBTraceManager
  virtual void DisplayInfoForTracesForSpecificTPs(vtkMySQLDatabase *iDatabaseConnector,
    const std::list<unsigned int> & iListTPs);

  void AddInfoForMeshesInTWForSpecificTPs(vtkMySQLDatabase *iDatabaseConnector,
    const std::list<unsigned int> & iListTPs);

  void SetMeshBoundingBoxAndPoints(unsigned int iXCoordMin,
                                   unsigned int iYCoordMin,
                                   unsigned int iZCoordMin,
                                   unsigned int iXCoordMax,
                                   unsigned int iYCoordMax,
                                   unsigned int iZCoordMax,
                                   vtkPolyData *iTraceNodes,
                                   vtkMySQLDatabase *iDatabaseConnector,
                                   GoDBMeshRow & iMesh,
                                   GoFigureMeshAttributes *iMeshAttributes,
                                   int iShift = 0);
  //virtual pure method in QGoDBTraceManager
  virtual void GetTracesInfoFromDBAndModifyContainerForVisu(
    vtkMySQLDatabase* iDatabaseConnector,
    std::list<unsigned int> iVectIDs = std::list< unsigned int >());

  std::pair<unsigned int, unsigned int> GetInfoForTheOnlyOneCheckedMeshOfTheTrack(
    vtkMySQLDatabase* iDatabaseConnector, unsigned int iTrackID);

protected slots:
  //virtual pure method in QGoDBTraceManager
  virtual void UpdateHighlightedElementsInVisuContainer(int iTraceID);

  //virtual pure method in QGoDBTraceManager
  virtual void UpdateVisibleElementsInVisuContainer(int iTraceID);

  //virtual pure method in QGoDBTraceManager
  virtual void SetColorCoding(bool IsChecked);

  void UpdateCellType();

  void UpdateSubCellType();

};
#endif