QGoDBLineageManager.h

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/*=========================================================================
 Authors: The GoFigure Dev. Team.
 at Megason Lab, Systems biology, Harvard Medical school, 2009-11

 Copyright (c) 2009-11, President and Fellows of Harvard College.
 All rights reserved.

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 this list of conditions and the following disclaimer.
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 nor the names of its contributors may be used to endorse or promote
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#ifndef __QGoDBLineageManager_h
#define __QGoDBLineageManager_h

#include "QGoTableWidget.h"
#include "GoDBCollectionOfTraces.h"
#include "GoDBTWContainerForLineage.h"
#include "QGoDBTraceManager.h"
#include "QGoGUILibConfigure.h"
#include "LineageContainer.h"
#include "TrackContainer.h"

class QGOGUILIB_EXPORT QGoDBLineageManager:public QGoDBTraceManager
{
  Q_OBJECT
public:
  QGoDBLineageManager(int iImgSessionID, QWidget *iparent);
  ~QGoDBLineageManager();

  virtual void DisplayInfoForLastCreatedTrace(vtkMySQLDatabase *iDatabaseConnector);

  virtual void DisplayInfoForExistingTrace(vtkMySQLDatabase *iDatabaseConnector,
                                           int iTraceID);

  void SetLineagesInfoContainersForVisu( LineageContainer *iContainerForVisu,
    TrackContainer *iTrackContainerInfoForvisu);

  void DisplayInfoAndLoadVisuContainerForAllLineages(
    vtkMySQLDatabase *iDatabaseConnector);

  unsigned int CreateNewLineageWithTrackRoot(
      vtkMySQLDatabase *iDatabaseConnector, unsigned int iTrackRoot);

  //virtual pure method in QGoDBTraceManager
  std::list< unsigned int > UpdateTheTracesColor(vtkMySQLDatabase *iDatabaseConnector);

  //virtual pure method in QGoDBTraceManager
  virtual void UpdateTWAndContainerForImportedTraces(
    const std::vector< int > & iVectorImportedTraces,
    vtkMySQLDatabase *iDatabaseConnector);

  void DeleteListTraces(vtkMySQLDatabase *iDatabaseConnector,
    const std::list<unsigned int> & iListTraces);

  //virtual pure method in QGoDBTraceManager
  virtual void DeleteCheckedTraces( vtkMySQLDatabase *iDatabaseConnector);

   //virtual pure method in QGoDBTraceManager
  virtual std::list< unsigned int > GetListHighlightedIDs();

  virtual void UpdateBoundingBoxes(vtkMySQLDatabase *iDatabaseConnector,
                                   const std::list< unsigned int > & iListTracesIDs,
                                   bool UpdateTW = true);

public slots:

  void UpdateElementHighlighting(unsigned int);

  /*
   * \brief Export all the lineages to vtkTree into the folder chosen by the user.
   * Those trees can be read with the lineageViewer.
   */
  void ExportLineages();

protected:
  GoDBTWContainerForLineage      *m_TWContainer;
  LineageContainer               *m_LineageContainerInfoForVisu;
  TrackContainer                 *m_TrackContainerInfoForVisu;

  //virtual pure method in QGoDBTraceManager
  virtual void SetCollectionsTraceNames();

  //virtual pure method in QGoDBTraceManager
  virtual void DisplayInfoForAllTraces(vtkMySQLDatabase *iDatabaseConnector);

  //virtual pure method in QGoDBTraceManager
  virtual void DisplayInfoForTracesForSpecificTPs(
    vtkMySQLDatabase *iDatabaseConnector,
    const std::list<unsigned int> & iListTPs);

  //virtual pure method in QGoDBTraceManager
  virtual void GetTracesInfoFromDBAndModifyContainerForVisu(
    vtkMySQLDatabase* iDatabaseConnector,
    std::list<unsigned int> iListTraceIDs = std::list< unsigned int >());

  void InsertLineageInTW(vtkMySQLDatabase *iDatabaseConnector,
    unsigned int iTraceID);

  void UpdateTrackRootSelectedLineage(vtkMySQLDatabase* iDatabaseConnector,
    unsigned int iLineageID, unsigned int iTrackIDRoot);

   /*
   * \brief Update the scalars and colors for all the divisions of a
   lineage in the trackContainer for the visu
   */
  void UpdateDivisionsInTrackContainer(unsigned int iLineageID);

  void DeleteDivisionsForLineages(
  vtkMySQLDatabase *iDatabaseConnector,
    const std::list<unsigned int> & iLineageID);

  void DeleteADivision(
  vtkMySQLDatabase *iDatabaseConnector, unsigned int iTrackFamilyID);

protected slots:
  //virtual pure method in QGoDBTraceManager
  virtual void UpdateHighlightedElementsInVisuContainer(int iTraceID);

  //virtual pure method in QGoDBTraceManager
  virtual void UpdateVisibleElementsInVisuContainer(int iTraceID);

 //virtual pure method in QGoDBTraceManager
  virtual void SetColorCoding(bool IsChecked);

  virtual void DeleteTracesFromContextMenu();

};
#endif