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ConversionLsmToMegaThread.h
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1 /*=========================================================================
2  Authors: The GoFigure Dev. Team.
3  at Megason Lab, Systems biology, Harvard Medical school, 2009-11
4 
5  Copyright (c) 2009-11, President and Fellows of Harvard College.
6  All rights reserved.
7 
8  Redistribution and use in source and binary forms, with or without
9  modification, are permitted provided that the following conditions are met:
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12  this list of conditions and the following disclaimer.
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14  this list of conditions and the following disclaimer in the documentation
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17  nor the names of its contributors may be used to endorse or promote
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33 =========================================================================*/
34 
35 #ifndef __ConversionLsmToMegaThread_h
36 #define __ConversionLsmToMegaThread_h
37 
38 #include <qstring.h>
39 #include <qthread.h>
40 #include <vector>
41 
42 #include "fstream"
43 #include "GoFigureGlobalDefinition.h"
44 #include "QGoGUILibConfigure.h"
45 
46 class vtkLSMReader;
47 
48 class QGOGUILIB_EXPORT ConversionLsmToMegaThread:public QThread
49 {
50  Q_OBJECT
51 public:
55  ConversionLsmToMegaThread();
56 
60  virtual ~ConversionLsmToMegaThread();
61 
66  void SetBaseName(std::string iBaseName);
67 
72  void SetLsmPath(std::string iLsmPath);
73 
78  void SetMegaPath(std::string iMegaPath);
79 
84  void SetOutputFileType(const GoFigure::FileType & iFileType);
85 
90  void ExportWithReimplemented(std::string iMegaPath);
91 
95  int GetNumberOfPoints();
96 
97 public slots :
98 signals:
99  void ConversionTerminatedSent();
100 
101  void InitialisationProgressSent();
102 
103  void ProgressSent();
104 
105 protected:
109  void run();
110 
111 private:
112  ConversionLsmToMegaThread(const ConversionLsmToMegaThread &);
113  ConversionLsmToMegaThread operator=(const ConversionLsmToMegaThread &);
114 
115  std::string m_BaseName;
116  std::string m_LsmPath;
117  std::string m_MegaPath;
118  GoFigure::FileType m_FileType;
119  std::vector< vtkLSMReader * > m_LSMReaders;
120  unsigned int m_Plaque;
121  unsigned int m_Row;
122  unsigned int m_Column;
123  unsigned int m_XTile;
124  unsigned int m_YTile;
125  unsigned int m_ZTile;
126  double m_XOverlap;
127  double m_YOverlap;
128  double m_ZOverlap;
129  unsigned int m_NumberOfChannels;
130  unsigned int m_NumberOfTimePoints;
131  unsigned int m_Dim;
132 };
133 
134 #endif
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