com.pixelmed.convert
Class NRRDToDicom

java.lang.Object
  com.pixelmed.convert.NRRDToDicom

public class NRRDToDicom
extends Object

A class for converting NRRD image input format files into images of a specified or appropriate SOP Class.

Constructor Summary

NRRDToDicom(String inputFileName, String outputFileName, String patientName, String patientID, String studyID, String seriesNumber, String instanceNumber)
Read an NRRD image input format files and create an image of a specified or appropriate SOP Class.

NRRDToDicom(String inputFileName, String outputFileName, String patientName, String patientID, String studyID, String seriesNumber, String instanceNumber, String modality, String sopClass)
Read an NRRD image input format files and create an image of a specified or appropriate SOP Class.

Method Summary

static AttributeList	generateDICOMPixelDataModuleAttributesFromNRRDFile(File inputFile, NRRDHeader nrrd, AttributeList list) Using an NRRD image input file and header, create DICOM Pixel Data Module attributes.
static AttributeList	generateGeometryFunctionalGroupsFromNRRDHeader(NRRDHeader nrrd, AttributeList list) Read a per-frame and shared functional group sequences for the geometry defined in a NIfTI-1 file header.
static void	main(String[] arg) Read an NRRD image input format files and create an image of a specified or appropriate SOP Class.

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Constructor Detail

NRRDToDicom

public NRRDToDicom(String inputFileName,
                   String outputFileName,
                   String patientName,
                   String patientID,
                   String studyID,
                   String seriesNumber,
                   String instanceNumber)
            throws IOException,
                   DicomException,
                   NRRDException

Read an NRRD image input format files and create an image of a specified or appropriate SOP Class.

Parameters:

inputFileName -

outputFileName -

patientName -

patientID -

studyID -

seriesNumber -

instanceNumber -

Throws:

IOException

DicomException

NRRDException

NRRDToDicom

public NRRDToDicom(String inputFileName,
                   String outputFileName,
                   String patientName,
                   String patientID,
                   String studyID,
                   String seriesNumber,
                   String instanceNumber,
                   String modality,
                   String sopClass)
            throws IOException,
                   DicomException,
                   NRRDException,
                   NumberFormatException

Read an NRRD image input format files and create an image of a specified or appropriate SOP Class.

Parameters:

inputFileName -

outputFileName -

patientName -

patientID -

studyID -

seriesNumber -

instanceNumber -

modality - may be null

sopClass - may be null

Throws:

IOException

DicomException

NRRDException

NumberFormatException

Method Detail

generateGeometryFunctionalGroupsFromNRRDHeader

public static AttributeList generateGeometryFunctionalGroupsFromNRRDHeader(NRRDHeader nrrd,
                                                                           AttributeList list)
                                                                    throws DicomException,
                                                                           NRRDException,
                                                                           NumberFormatException

Read a per-frame and shared functional group sequences for the geometry defined in a NIfTI-1 file header.

Parameters:

nrrd - an NRRD header

list - an existing (possibly empty) attribute list, if null, a new one will be created; may already shared and per-frame functional group sequences or they will be added return attribute list with per-frame and shared functional group sequences for geometry added

Throws:

DicomException

NRRDException

NumberFormatException

generateDICOMPixelDataModuleAttributesFromNRRDFile

public static AttributeList generateDICOMPixelDataModuleAttributesFromNRRDFile(File inputFile,
                                                                               NRRDHeader nrrd,
                                                                               AttributeList list)
                                                                        throws IOException,
                                                                               DicomException,
                                                                               NRRDException,
                                                                               NumberFormatException

Using an NRRD image input file and header, create DICOM Pixel Data Module attributes.

Parameters:

inputFile - an NRRD format image file

nrrd - an NRRD header already read from the inputFile

list - an existing (possibly empty) attribute list, if null, a new one will be created; may already include "better" image pixel module attributes to use return attribute list with Image Pixel Module (including Pixel Data) and other attributes added

Throws:

IOException

DicomException

NRRDException

NumberFormatException

main

public static void main(String[] arg)

Read an NRRD image input format files and create an image of a specified or appropriate SOP Class.

Parameters:

arg - seven, eight or nine parameters, the inputFile, outputFile, patientName, patientID, studyID, seriesNumber, instanceNumber, and optionally the modality, and SOP Class