Normalization of intensities in a set of maps using robust regression.
| potential predecessor tools |  ConsensusMapNormalizer | potential successor tools |
| FeatureLinkerUnlabeled (or another feature grouping tool) | ProteinQuantifier | |
| TextExporter |
The tool normalizes the intensities of a set of maps (consensusXML file) using robust regression. Maps are normalized pair-wise relative to the map with the most features. Given two maps, peptide featues are classified as non-outliers (ratio_threshold < intensity ratio < 1/ratio_threshold) or outliers. From the non-outliers an average intensity ratio is calculated and used for normalization.
The command line parameters of this tool are: