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Needle
An application for fast and efficient searches of NGS data.
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arguments used for estimate, ibf, minimiser More...
#include </build/reproducible-path/seqan-needle-1.0.2+ds/include/shared.h>
Public Attributes | |
| uint8_t | k {20} |
| seqan3::seed | s {0x8F3F73B5CF1C9ADEULL} |
| seqan3::shape | shape = seqan3::ungapped{k} |
| seqan3::window_size | w_size {60} |
Public Attributes inherited from all_arguments | |
| std::filesystem::path | path_out {"./"} |
| uint8_t | threads {1} |
arguments used for estimate, ibf, minimiser
| uint8_t min_arguments::k {20} |
| seqan3::seed min_arguments::s {0x8F3F73B5CF1C9ADEULL} |
| seqan3::shape min_arguments::shape = seqan3::ungapped{k} |
| seqan3::window_size min_arguments::w_size {60} |