libpappsomspp
Library for mass spectrometry
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pappso::TimsFrameBase Member List

This is the complete list of members for pappso::TimsFrameBase, including all inherited members.

checkScanNum(std::size_t scanNum) constpappso::TimsFrameBase
cumulateScansInRawMap(TimsDataFastMap &rawSpectrum, std::size_t scanNumBegin, std::size_t scanNumEnd) constpappso::TimsFrameBasevirtual
cumulateScansIntensities(std::size_t scanNumBegin, std::size_t scanNumEnd) constpappso::TimsFrameBasevirtual
cumulateScansToTrace(std::size_t scanNumBegin, std::size_t scanNumEnd) constpappso::TimsFrameBasevirtual
cumulateScansToTraceMzDownResolution(std::size_t mzindex_merge_window, std::size_t scanNumBegin, std::size_t scanNumEnd, quint32 &minimum_index, quint32 &maximum_index) constpappso::TimsFrameBasevirtual
cumulateScansToTraceMzDownResolution2(std::size_t mz_index_merge_window, double mz_range_begin, double mz_range_end, std::size_t mobility_scan_begin, std::size_t mobility_scan_end, quint32 &mz_minimum_index_out, quint32 &mz_maximum_index_out) constpappso::TimsFrameBasevirtual
cumulateSingleScanIntensities(std::size_t scanNum) constpappso::TimsFrameBasevirtual
downsizeMzRawValuePairList(std::size_t mzindex_merge_window, std::vector< RawValuePair > &spectrum) constpappso::TimsFrameBaseprotectedvirtual
getDriftTime(std::size_t scanNum) constpappso::TimsFrameBase
getId() constpappso::TimsFrameBase
getIonMobilityTraceByMzIndexRange(std::size_t mz_index_lower_bound, std::size_t mz_index_upper_bound, XicExtractMethod method) constpappso::TimsFrameBasevirtual
getMassSpectrumCstSPtr(std::size_t scanNum) const finalpappso::TimsFrameBasevirtual
getMassSpectrumSPtr(std::size_t scanNum) constpappso::TimsFrameBasevirtual
getMaximumRawMassIndex() constpappso::TimsFrameBasevirtual
getMobilityScan(std::size_t scanNum, std::size_t mz_index_merge_window, double mz_range_begin, double mz_range_end, quint32 &mz_minimum_index_out, quint32 &mz_maximum_index_out) constpappso::TimsFrameBasevirtual
getMsLevel() constpappso::TimsFrameBase
getMzCalibrationInterfaceSPtr() const finalpappso::TimsFrameBasevirtual
getNbrPeaks(std::size_t scanNum) constpappso::TimsFrameBasevirtual
getOneOverK0Transformation(std::size_t scanNum) constpappso::TimsFrameBase
getScanIndexList(std::size_t scanNum) constpappso::TimsFrameBasevirtual
getScanIntensities(std::size_t scanNum) constpappso::TimsFrameBasevirtual
getScanNumFromOneOverK0(double one_over_k0) constpappso::TimsFrameBase
getTime() constpappso::TimsFrameBase
getTotalNumberOfScans() constpappso::TimsFrameBasevirtual
getTraceFromCumulatedScans(TimsDataFastMap &accumulated_scans) constpappso::TimsFrameBase
getVoltageTransformation(std::size_t scanNum) constpappso::TimsFrameBase
hasSameCalibrationData(const TimsFrameBase &other) constpappso::TimsFrameBasevirtual
m_accumulationTimepappso::TimsFrameBaseprotected
m_msMsTypepappso::TimsFrameBaseprotected
m_scanNumberpappso::TimsFrameBaseprotected
m_timepappso::TimsFrameBaseprotected
m_timsC6pappso::TimsFrameBaseprotected
m_timsC7pappso::TimsFrameBaseprotected
m_timsDvStartpappso::TimsFrameBaseprotected
m_timsIdpappso::TimsFrameBaseprotected
m_timsNdelaypappso::TimsFrameBaseprotected
m_timsSlopepappso::TimsFrameBaseprotected
m_timsTtranspappso::TimsFrameBaseprotected
m_timsVmaxpappso::TimsFrameBaseprotected
m_timsVminpappso::TimsFrameBaseprotected
msp_mzCalibrationpappso::TimsFrameBaseprotected
setAccumulationTime(double accumulation_time_ms)pappso::TimsFrameBase
setMsMsType(quint8 type)pappso::TimsFrameBase
setMzCalibration(double T1_frame, double T2_frame, double digitizerTimebase, double digitizerDelay, double C0, double C1, double C2, double C3, double C4, double T1_ref, double T2_ref, double dC1, double dC2)pappso::TimsFrameBase
setMzCalibrationInterfaceSPtr(MzCalibrationInterfaceSPtr mzCalibration)pappso::TimsFrameBase
setTime(double time)pappso::TimsFrameBase
setTimsCalibration(int tims_model_type, double C0, double C1, double C2, double C3, double C4, double C5, double C6, double C7, double C8, double C9)pappso::TimsFrameBase
TimsFrameBase(std::size_t timsId, quint32 scanNum)pappso::TimsFrameBase
TimsFrameBase(const TimsFrameBase &other)pappso::TimsFrameBase
~TimsFrameBase()pappso::TimsFrameBasevirtual